Phylogenetic analysis of NoV GII partial capsid nucleotide (nt) sequences from Australia and New Zealand.

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Title

Phylogenetic analysis of NoV GII partial capsid nucleotide (nt) sequences from Australia and New Zealand.

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Description

Neighbour-Joining phylogeny of sequences of the 5’ end of ORF2 was generated. NoV GII sequences (266-bp, nt position 5101–5366 with reference to Lordsdale virus, GenBank accession number X86557) are shown. Global NoV reference sequences (n = 78) genotype were obtained from GenBank and are labelled with the GenBank accession number in black. The detailed reference strain information and collection year are tabulated in S1 Table. Representative NoV sequences used for the phylogenetic analysis (...

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Date created

26 Apr, 2016

Creator

Kun Lee Lim / Joanne Hewitt / Alefiya Sitabkhan / John-Sebastian Eden / Jennifer Lun / Avram Levy / Juan Merif / David Smith / William D. Rawlinson / Peter A. White

URL

https://figshare.com/articles/figure/Phylogenetic_analysis_of_NoV_GII_partial_capsid_nucleotide_n...

Related subjects

NoV capsid genotypes / New Zealand / recombinant / gastroenteriti / NoV outbreaks / pandemic GII / New South Wales / June 2014. Methodology / Sydney 2012 variant / ORF / analysis / Norovirus Molecular Epidemiology / GII.P / Medicine / Genetics / Molecular Biology / Neuroscience / Evolutionary Biology / Environmental Sciences not elsewhere classified / Developmental Biology / Cancer / Infectious Diseases / Virology / Computational Biology

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